| Name | Age | Club | Time | Splits | ||
| 1 | Alistair Davis | 16 | Glenrothes | 59.13 | 28.14 | 59.13 |
| 2 | John McDonald | 16 | Portobello | 59.28 | 28.44 | 59.28 |
| 3 | Christopher Aitchison | 17 | Aquanauts Li | 59.67 | 28.68 | 59.67 |
| 4 | Daniel McCart | 16 | Aquanauts Li | 59.78 | 28.73 | 59.78 |
| 5 | Andrew Melville | 17 | Aquanauts Li | 1:00.07 | 28.60 | 1:00.07 |
| 6 | Scott Caldwell | 17 | Livingston | 1:01.03 | 29.42 | 1:01.03 |